rs29562198 SNP Detail

Summary

• ID
  rs29562198
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102285051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGATGGG GAAACATCAT
  CTCTTTAGAC CTTCAGCAGT TGCGTAGGGA TCCCCAAATA AGAACCTATT TTCTCTTTTA
  AGAATCTCTT AGTACTCCTT AAGCTTAGAC CTCCAATATA TTCACAGTTG CCTGAAGTCC
  TGTGTGAACA ATGGTCAGGC TCACAGAACC ACACTTTCTG GGCAACTTAG GAAAGGTGGC
  R
  CGAGCGCTGG GAGCCAAGAG TGAGGCTCGA GGTTGAAAGG CTTTCCATTT TCTGACTTGT
  TCCTTGGGCT AGTTTTTATC TCCCATGCAT TTCAATTTCT CAACTTGAGA AATGAGGATA
  ATAAATCGCG CCAAACTTAC AGGTTGTTAT GCAGCTCAGG TGAAATATTA ACGGTAACCA
  TAACAACAGC ATTAGCAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45337474	mCV23728633	ABI	CRAMUS_MOUSE	f	SNP		G	A	A
ss147112389	ENSMUSSNP1773504	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
ss320437769	CHEV_2_102294863	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29562198					SNP	A	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102285051 () rs orientation: forward

Symbol	Name	Function Class
Rr561697	regulatory region 561697	868 bp distal
Rr561698	regulatory region 561698	1115 bp distal