rs29563124 SNP Detail

Summary

• ID
  rs29563124
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:92472719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATTT ATTCTAAATG TCTCTCACCA
  Y
  GTCTGTTGAT TTTTATACAT TGTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45837685	mCV25083289	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss148831442	ENSMUSSNP4064670	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss321612248	CHEV_5_92753886	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29563124					SNP	C	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92472719 () rs orientation: forward

Symbol	Name	Function Class
Cxcl9	C-X-C motif chemokine ligand 9	Intron
Rr614603	regulatory region 614603	1223 bp distal
Tssr1547	transcription start site region 1547	1942 bp downstream
Tssr47287	transcription start site region 47287	1869 bp downstream
Tssr47288	transcription start site region 47288	1081 bp downstream
Tssr47289	transcription start site region 47289	1071 bp downstream
Tssr47290	transcription start site region 47290	1056 bp downstream
Tssr47291	transcription start site region 47291	1014 bp downstream
Tssr47292	transcription start site region 47292	257 bp upstream
Tssr47293	transcription start site region 47293	1905 bp upstream
Tssr47294	transcription start site region 47294	1942 bp upstream
Tssr51866	transcription start site region 51866	1754 bp upstream
Tssr51867	transcription start site region 51867	1152 bp upstream
Tssr51868	transcription start site region 51868	1106 bp upstream
Tssr51869	transcription start site region 51869	1064 bp upstream
Tssr51870	transcription start site region 51870	1014 bp upstream
Tssr51871	transcription start site region 51871	979 bp upstream
Tssr51872	transcription start site region 51872	252 bp downstream
Tssr51873	transcription start site region 51873	1930 bp downstream
Tssr51874	transcription start site region 51874	1955 bp downstream