rs29563520 SNP Detail

Summary

• ID
  rs29563520
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:64645389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCGAGCTTG CACAGAGACC TGTGAAATCC CACAGAACAC
  AGGAAGTGTC TAATTCCGCT GGATCGGGCT GGTGTCAAGG CAGCTGACAG CTTCAGAGCC
  R
  AGAGCCTCCA GAATCCTTTT TGGTAAGGAA TGTCAGCTAC AAGGGGAATC CCTACCTCAC
  CATCTACACA GAGTTCAAAG GAAATGCAGA TTTAATCAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45834946	mCV22372402	ABI	CRAMUS_MOUSE	f	SNP		A					A		G
ss61173171	NES16687552	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	G		G	G	A	A		G	A	G	G		G
ss321560863	CHEV_5_64879285	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29563520					SNP	A	A	A	G	A	G	A	G	G	A	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61173171	NES16687552	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:64645389 () rs orientation: forward

Symbol	Name	Function Class
Gm57288	predicted gene, 57288	within coordinates
Rr118672	regulatory region 118672	1212 bp proximal
Rr122953	regulatory region 122953	1693 bp distal
Rr129656	regulatory region 129656	1613 bp proximal
Rr131555	regulatory region 131555	847 bp distal
Rr367844	regulatory region 367844	48 bp downstream
Tssr46401	transcription start site region 46401	173 bp downstream