rs29563547 SNP Detail

Summary

• ID
  rs29563547
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92469693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTCC CACACAGGCT AACTTGGCCC
  Y
  GTCCACACTT CCACTCGCAG AATTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45838388	mCV23636454	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T	C
ss321612233	CHEV_5_92750860	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29563547					SNP	T	T	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92469693 () rs orientation: forward

Symbol	Name	Function Class
Cxcl9	C-X-C motif chemokine ligand 9	within coordinates
Rr614602	regulatory region 614602	within coordinates
Rr614603	regulatory region 614603	1413 bp proximal
Tssr47287	transcription start site region 47287	1150 bp upstream
Tssr47288	transcription start site region 47288	1933 bp upstream
Tssr47289	transcription start site region 47289	1950 bp upstream
Tssr47290	transcription start site region 47290	1962 bp upstream
Tssr51864	transcription start site region 51864	898 bp downstream
Tssr51865	transcription start site region 51865	976 bp downstream
Tssr51866	transcription start site region 51866	1265 bp downstream
Tssr51867	transcription start site region 51867	1857 bp downstream
Tssr51868	transcription start site region 51868	1913 bp downstream
Tssr51869	transcription start site region 51869	1959 bp downstream