rs29563557 SNP Detail

Summary

• ID
  rs29563557
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:138082058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAA CCCTTCAAAG CACAAGCGTG
  S
  TTTGTAGTCC ATGCATGAAT AAAGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45838188	mCV22888326	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	C	G
ss144537685	ENSMUSSNP1031448	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G		G
ss321703421	CHEV_5_138525024	CHEVERUD	SCREENING_POP	f	SNP						G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29563557					SNP	C	C	G	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:138082058 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16852	CpG island 16852	1219 bp proximal
Rr116778	regulatory region 116778	1258 bp distal
Rr124606	regulatory region 124606	742 bp proximal
Tssr49408	transcription start site region 49408	1287 bp upstream
Tssr49409	transcription start site region 49409	1377 bp upstream
Zkscan1	zinc finger with KRAB and SCAN domains 1	1288 bp upstream