rs29563809 SNP Detail

Summary

• ID
  rs29563809
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:62224987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTT CTTTCATTTA GCAACTAGTG
  W
  GTTGATTTTG AAGTACTTCT TGTGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss39590803	mCV22287897	ABI	CRAMUS_MOUSE	f	SNP		A	T					A	A
ss50423280	NES13459642	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	A	A		A	T		T		A
ss147264881	ENSMUSSNP598568	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T						A
ss325648537	CHEV_18_62251570	CHEVERUD	SCREENING_POP	f	SNP											A		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs29563809					SNP	A	A	T	T	T	A	A	A	A	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50423280	NES13459642	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:62224987 () rs orientation: forward

Symbol	Name	Function Class
Gm41750	predicted gene, 41750	1291 bp upstream