rs29563853 SNP Detail

Summary

• ID
  rs29563853
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130916148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAG TTCCTTCCCC TGCAGCCTTT
  K
  CCTGCTCCTG CTTTACCTTC CAGCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45338322	mCV22651030	ABI	CRAMUS_MOUSE	f	SNP	T	T	G
ss147598557	ENSMUSSNP2556920	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29563853					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130916148 () rs orientation: forward

Symbol	Name	Function Class
Siglec1	sialic acid binding Ig-like lectin 1, sialoadhesin	within coordinates
Tssr26349	transcription start site region 26349	1596 bp upstream
Tssr26350	transcription start site region 26350	1577 bp upstream
Tssr26351	transcription start site region 26351	1555 bp upstream
Tssr26352	transcription start site region 26352	75 bp downstream
Tssr26353	transcription start site region 26353	200 bp downstream
Tssr26354	transcription start site region 26354	272 bp downstream
Tssr26355	transcription start site region 26355	788 bp downstream