rs29563960 SNP Detail

Summary

• ID
  rs29563960
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45826624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTCA AGACCCCCAA ATTCCTTTTA
  Y
  ACTGTCTGCG TTCTCCTCTG CTTAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45838102	mCV22817591	ABI	CRAMUS_MOUSE	f	SNP		T	C					T		C
ss51715805	NES14748530	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		T	C	C	C		C	T		T
ss148353183	ENSMUSSNP2513171	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
ss321527216	CHEV_5_46060521	CHEVERUD	SCREENING_POP	f	SNP													C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29563960					SNP	T	T	C	C	C	T	C	T	T	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51715805	NES14748530	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45826624 () rs orientation: forward

Symbol	Name	Function Class
1600023N17Rik	RIKEN cDNA 1600023N17 gene	within coordinates
Cpgi15841	CpG island 15841	within coordinates
Ncapg	non-SMC condensin I complex, subunit G	637 bp upstream
Rr367838	regulatory region 367838	300 bp upstream
Rr611093	regulatory region 611093	655 bp distal
Rr611094	regulatory region 611094	771 bp distal
Rr611095	regulatory region 611095	366 bp distal
Rr611096	regulatory region 611096	147 bp proximal
Rr611097	regulatory region 611097	388 bp proximal
Tssr46141	transcription start site region 46141	602 bp upstream
Tssr46142	transcription start site region 46142	625 bp upstream
Tssr46143	transcription start site region 46143	722 bp upstream
Tssr46144	transcription start site region 46144	951 bp upstream