rs29564272 SNP Detail

Summary

• ID
  rs29564272
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123127697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGGAGGG AGGTGCAGAT
  TTGCACGGAT GGCCTCAGCG GGAGGCGCGG AAATGCTAGC CAAGCCTGCT GGCGTGAAAG
  CCCCCGGGGC CTGGCACCCC CCAAAACGAC CCCCCACCTC TGCCCCTGCC CCCTCTTGCT
  TGGGTTACGC AGGGCTGTCC CTCTCTTCCT TCACCCACCT TTCCTCATTA CCTATGCTGG
  Y
  GACCTAAATT CAAAGTATTT TGTATGTGTG ATTTCTTTTT CTGTTTTGCT TTTCTACTGC
  ATGCCTGGGG GGAGGGGCCA GCCTGTCCAG ACCCTTATCC ATTTGCGAAC CTGCCATATG
  GAGGAGGCAT CTGAGGGGCT CAGAAAGAAA TTACCTCAGC ACTGTATCTG TACAGACTGC
  ATAACTTTTA AACTCCCGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45834958	mCV24884202	ABI	CRAMUS_MOUSE	f	SNP		T	T						C
ss51195115	NES13813427	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	C	C	C	C	C	C		C	C	C	C		T
ss149192198	ENSMUSSNP1701736	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
ss321670133	CHEV_5_123439643	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29564272					SNP	T	T	T	C	T	C	C	C	C	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51195115	NES13813427	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123127697 () rs orientation: forward

Symbol	Name	Function Class
A930024E05Rik	RIKEN cDNA A930024E05 gene	within coordinates
Cpgi16565	CpG island 16565	905 bp distal
Cpgi16566	CpG island 16566	101 bp distal
Gm44574	predicted gene 44574	within coordinates
Gm73435	predicted gene, 73435	1172 bp upstream
Kdm2b	lysine (K)-specific demethylase 2B	364 bp upstream
Rr620030	regulatory region 620030	1112 bp distal
Rr620031	regulatory region 620031	611 bp distal
Rr620032	regulatory region 620032	486 bp distal
Rr620033	regulatory region 620033	339 bp distal
Rr620034	regulatory region 620034	within coordinates
Rr620035	regulatory region 620035	179 bp proximal
Rr620036	regulatory region 620036	682 bp proximal
Rr620037	regulatory region 620037	1183 bp proximal
Tssr48730	transcription start site region 48730	382 bp downstream
Tssr48731	transcription start site region 48731	353 bp downstream
Tssr48732	transcription start site region 48732	319 bp downstream
Tssr48733	transcription start site region 48733	268 bp downstream
Tssr48734	transcription start site region 48734	22 bp downstream
Tssr48735	transcription start site region 48735	84 bp upstream
Tssr48736	transcription start site region 48736	110 bp upstream
Tssr48737	transcription start site region 48737	284 bp upstream
Tssr48738	transcription start site region 48738	1124 bp upstream
Tssr48739	transcription start site region 48739	1141 bp upstream
Tssr48740	transcription start site region 48740	1156 bp upstream
Tssr48741	transcription start site region 48741	1221 bp upstream
Tssr53169	transcription start site region 53169	1108 bp upstream
Tssr53170	transcription start site region 53170	929 bp upstream
Tssr53171	transcription start site region 53171	554 bp upstream
Tssr53172	transcription start site region 53172	523 bp upstream
Tssr53173	transcription start site region 53173	354 bp upstream
Tssr53174	transcription start site region 53174	296 bp upstream
Tssr53175	transcription start site region 53175	651 bp downstream
Tssr53176	transcription start site region 53176	770 bp downstream
Tssr53177	transcription start site region 53177	826 bp downstream
Tssr53178	transcription start site region 53178	843 bp downstream
Tssr53179	transcription start site region 53179	884 bp downstream
Tssr53180	transcription start site region 53180	899 bp downstream