rs29564394 SNP Detail

Summary

• ID
  rs29564394
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:23924222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGAAG CGCTTGCTTT ATACGTGTGT
  K
  TCGTCACTGA AGATTGACCT TGTAT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39093420	mCV22703083	ABI	CRAMUS_MOUSE	f	SNP		T					G
ss47383474	NES11348874	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T		G	T	T	G		G	T		G
ss148807849	ENSMUSSNP4697419	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							T
ss324291277	CHEV_13_23832108	CHEVERUD	SCREENING_POP	f	SNP												T			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29564394					SNP	T	T	T	T	G	T	G	G	T	T	G	T	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47383474	NES11348874	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23924222 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5372	CpG island 5372	177 bp distal
H1f2	H1.2 linker histone, cluster member	mRNA-UTR
Rr369656	regulatory region 369656	within coordinates
Rr388130	regulatory region 388130	1417 bp upstream
Rr475930	regulatory region 475930	1421 bp distal
Rr475931	regulatory region 475931	1053 bp distal
Rr475932	regulatory region 475932	1572 bp proximal
Tssr118854	transcription start site region 118854	1430 bp downstream
Tssr118855	transcription start site region 118855	1041 bp downstream
Tssr118856	transcription start site region 118856	304 bp downstream
Tssr118857	transcription start site region 118857	64 bp downstream