rs29565520 SNP Detail

Summary

• ID
  rs29565520
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:160209716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGCTCTGT CTGCGCTAAT
  GTATGCGGTG GGGGAGGGCG GGGTTGGGGC TCCAAGAGTT CTGTTCAGAT CTAACTCTTA
  ACCTCTAGGA AGGTTCCTCG GGCCAAGAGA CGCTGTTCCT CTCTTAGCCG GTTCAGTGAT
  TGAGCTCAGA AGACAGAGCT CCAGTGGTCT CGCAGCTCCG TGCATTCGCC ACCCCCCCAC
  M
  CACACCCCCA AACGCTCCCA AAGAAGATAA ACAAACAAAC AGAGTTGGCC CAAAGGCTCT
  GAATACCTTT CACTTGCCAG TCGTGTGGAA ACCTTACAAC TCCGAGGCTC AGAGCCGAGA
  CCAACACCGG TCTGTGCACT CAGTGGCTCT GGGATGCTGG GGAACCCGGC CCTGTTTTTG
  TCTGAACGTT TTGTAAGGAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45338261	mCV24753951	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29565520					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:160209716 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12607	CpG island 12607	within coordinates
Gm57434	predicted gene, 57434	within coordinates
Gm74788	predicted gene, 74788	within coordinates
Mafb	MAF bZIP transcription factor B	731 bp upstream
Rr55988	regulatory region 55988	within coordinates
Tssr21382	transcription start site region 21382	1988 bp downstream
Tssr21383	transcription start site region 21383	1552 bp downstream
Tssr21384	transcription start site region 21384	1512 bp downstream
Tssr21385	transcription start site region 21385	439 bp downstream
Tssr27240	transcription start site region 27240	723 bp upstream
Tssr27241	transcription start site region 27241	144 bp downstream