rs29566014 SNP Detail

Summary

• ID
  rs29566014
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:98828200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAA TCACTTGGTT GGTCCCTAAG
  M
  CAACAGAAGG CTCTAAAGCC ACCTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39091250	mCV24334925	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
ss145056190	ENSMUSSNP4962256	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss324500812	CHEV_13_99461647	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29566014					SNP	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:98828200 () rs orientation: forward

Symbol	Name	Function Class
Rr484611	regulatory region 484611	1380 bp distal
Rr484612	regulatory region 484612	1707 bp proximal
Rr484613	regulatory region 484613	1836 bp proximal
Tmem171	transmembrane protein 171	Intron
Tssr120815	transcription start site region 120815	612 bp upstream
Tssr123632	transcription start site region 123632	459 bp downstream
Tssr123633	transcription start site region 123633	503 bp downstream
Tssr123634	transcription start site region 123634	1023 bp downstream
Tssr123635	transcription start site region 123635	1033 bp downstream
Tssr123636	transcription start site region 123636	1067 bp downstream
Tssr123637	transcription start site region 123637	1097 bp downstream
Tssr123638	transcription start site region 123638	1427 bp downstream