rs29566302 SNP Detail

Summary

• ID
  rs29566302
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:128811401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCGCAGG AAATATGTGA
  ATGGCAGTCT CTTGCGTTAC GGCACCATCT AGTGGTGCCG TTGTGGAACA GCTTGCTTGT
  CACCCGTGGA AGAGTTTGAG CTGTTTTTCA GATTGTGACT TCTAGGGCTT ACAAAGTGAA
  GGCTCTGGGT CTATAATCCC ATCATTTTGG TGGCAGAGAC AGGAGGATCA TTGCAGGTTC
  R
  AGGCCAACCT GGTCTACGTA GCAAGTTTAA AACCAACCAG AGACCCTATC TCAAAGAAAT
  AAAAATAAAA ATAAAGGAAA AAGGAAAAAA AAAAAAAGAG CCATCAAGAT GAATCTATGT
  GTTCTTCAAA CCTTCAAACT ACTGTTTGTG CCAATATCTT GGCATTTCTC ATTAACTTTC
  TTTTGTTGTT GTTTTCAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45838927	mCV23759958	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss149244942	ENSMUSSNP3799552	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
ss321688011	CHEV_5_129240212	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29566302					SNP	A	A	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:128811401 () rs orientation: forward

Symbol	Name	Function Class
4930553I04Rik	RIKEN cDNA 4930553I04 gene	1023 bp downstream
Cpgi16665	CpG island 16665	1511 bp proximal
Gm71554	predicted gene, 71554	1015 bp downstream
Piwil1	piwi-like RNA-mediated gene silencing 1	1734 bp upstream
Rr621171	regulatory region 621171	1542 bp distal
Rr621172	regulatory region 621172	21 bp distal
Rr621173	regulatory region 621173	141 bp distal
Tssr1644	transcription start site region 1644	1823 bp upstream
Tssr48983	transcription start site region 48983	1749 bp upstream
Tssr48984	transcription start site region 48984	1788 bp upstream
Tssr48985	transcription start site region 48985	1831 bp upstream
Tssr48986	transcription start site region 48986	1905 bp upstream
Tssr53471	transcription start site region 53471	1674 bp downstream