rs29566519 SNP Detail

Summary

• ID
  rs29566519
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92477936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT ATGTATGTGA GTACACTGTA
  K
  CTGTACAGAT GGTTGTGAAC CTTCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45837355	mCV23365544	ABI	CRAMUS_MOUSE	f	SNP	G	T
ss148831542	ENSMUSSNP4994188	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss321612285	CHEV_5_92759103	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs29566519					SNP	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92477936 () rs orientation: forward

Symbol	Name	Function Class
Art3	ADP-ribosyltransferase 3	1750 bp upstream
Cxcl9	C-X-C motif chemokine ligand 9	1998 bp upstream
Tssr47295	transcription start site region 47295	1716 bp upstream
Tssr47296	transcription start site region 47296	1741 bp upstream
Tssr47297	transcription start site region 47297	1751 bp upstream
Tssr51876	transcription start site region 51876	1991 bp upstream