rs29567307 SNP Detail

Summary

• ID
  rs29567307
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24597711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGCTGTA TATTTTCTTT
  CTCTGAATGA AAGAGGGCAG ACTTTGTGGT TAGCCAGGAG AAAACAAGGA GTAAAAGGAA
  GGAGTGCTAG CCATCCTAGA TTGGAGCTTA AGGAAAAAAG GCTGGTTCCT TGAGAGTTCC
  ACTGTATCTT CCTTATCCTC TTGAACCCTG ATGTACTCTC CTCCAGTCCT GACCTGGTGT
  Y
  GGGGCCTCCT GAGACACGTC AGCGCAGGAA GGCAGGGGCC TTGAGAGGAT AATTTGGGTG
  TGTGGGGATG GACTGGCTCA GTTGAGTTCT TTGTTGTTGC CTCACCCGGG AGGAGGAGGC
  CCAGGTGGCT GGTCTGATGG CTTGCCCAAC GCCATTCCCA AGGCCATGAG TCACCAACTG
  CCCTACTGAA GCCCATGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss45835483	mCV25442924	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss148092986	ENSMUSSNP208400	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs29567307					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24597711 () rs orientation: forward

Symbol	Name	Function Class
Abcb8	ATP-binding cassette, sub-family B member 8	950 bp upstream
Atg9b	autophagy related 9B	570 bp upstream
Cpgi15597	CpG island 15597	1523 bp proximal
Rr112283	regulatory region 112283	90 bp proximal
Rr124925	regulatory region 124925	1089 bp proximal
Rr398998	regulatory region 398998	695 bp upstream
Rr398999	regulatory region 398999	1456 bp upstream
Tssr45411	transcription start site region 45411	927 bp upstream
Tssr45412	transcription start site region 45412	1675 bp upstream
Tssr50315	transcription start site region 50315	752 bp upstream
Tssr50316	transcription start site region 50316	706 bp upstream
Tssr50317	transcription start site region 50317	682 bp upstream
Tssr50318	transcription start site region 50318	219 bp upstream
Tssr50319	transcription start site region 50319	15 bp upstream