rs29567398 SNP Detail

Summary

• ID
  rs29567398
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124134751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATG ACACACCCAG CCCTGAACCA
  Y
  TGCTAGTGAC ATCTGAGATC CGGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss45838633	mCV23284259	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss149200723	ENSMUSSNP4920384	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321672181	CHEV_5_124446697	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs29567398					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124134751 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16597	CpG island 16597	1009 bp proximal
Hip1r	huntingtin interacting protein 1 related	within coordinates
Mir7032	microRNA 7032	164 bp upstream
Tssr48830	transcription start site region 48830	674 bp upstream
Tssr48831	transcription start site region 48831	1987 bp upstream