rs29567561 SNP Detail

Summary

• ID
  rs29567561
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119576479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAA GAAATTATCA GAGGGGCCTC
  S
  TTTGTCATCA GAGCATCGTG GACAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45338858	mCV22556943	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	C
ss147341121	ENSMUSSNP4454577	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320477119	CHEV_2_119571734	CHEVERUD	SCREENING_POP	f	SNP					G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29567561					SNP	C	C	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119576479 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12126	CpG island 12126	1058 bp distal
Itpka	inositol 1,4,5-trisphosphate 3-kinase A	Intron
Rr563573	regulatory region 563573	1459 bp distal
Rr563574	regulatory region 563574	386 bp distal
Rr563575	regulatory region 563575	916 bp distal