rs29568025 SNP Detail

Summary

• ID
  rs29568025
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123128758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTAGGTG ACTGCTGTTT
  TTATCTTGTC CCAATGTCAA GAGCACTGGT TCAGACAGAT ACGGGGAGGA AGTGGCCTTG
  CCACCTGAAA TCAGCTGTGA ACCACACATC GTCACCCTCC CTTACGTCAG AATTTCCTGC
  CTTATCGGTC TGTACTTTTT TTCCACCTGT CCCCAAATCT GCTCTTTGAA TTTTTTTTTA
  W
  AAATTCCATC CATGCACGTT ATCGGTAGAA ATCTACGTAG AGATGAGGCG ACAAACACCA
  AGTTTGTCAC CAAACTGAAA CTACATCTAC GTTGGCTCAG CTGCATTCTC TGGGCAGCCC
  TTCTAACCAT CCCTGTGAAA ACCAGGGGCC AGCTGGTGCT GTAACGCAGT CCTGGGATAT
  TTGGCCTAGC AAGCCTAAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45835778	mCV24884194	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A
ss321670139	CHEV_5_123440704	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29568025					SNP	T	T	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123128758 () rs orientation: forward

Symbol	Name	Function Class
A930024E05Rik	RIKEN cDNA A930024E05 gene	within coordinates
Cpgi16565	CpG island 16565	1966 bp distal
Cpgi16566	CpG island 16566	1162 bp distal
Gm44574	predicted gene 44574	within coordinates
Gm73435	predicted gene, 73435	111 bp upstream
Kdm2b	lysine (K)-specific demethylase 2B	1425 bp upstream
Rr620031	regulatory region 620031	1672 bp distal
Rr620032	regulatory region 620032	1547 bp distal
Rr620033	regulatory region 620033	1400 bp distal
Rr620034	regulatory region 620034	899 bp distal
Rr620035	regulatory region 620035	754 bp distal
Rr620036	regulatory region 620036	within coordinates
Rr620037	regulatory region 620037	122 bp proximal
Tssr48730	transcription start site region 48730	1443 bp downstream
Tssr48731	transcription start site region 48731	1414 bp downstream
Tssr48732	transcription start site region 48732	1380 bp downstream
Tssr48733	transcription start site region 48733	1329 bp downstream
Tssr48734	transcription start site region 48734	1083 bp downstream
Tssr48735	transcription start site region 48735	956 bp downstream
Tssr48736	transcription start site region 48736	933 bp downstream
Tssr48737	transcription start site region 48737	752 bp downstream
Tssr48738	transcription start site region 48738	63 bp upstream
Tssr48739	transcription start site region 48739	80 bp upstream
Tssr48740	transcription start site region 48740	95 bp upstream
Tssr48741	transcription start site region 48741	160 bp upstream
Tssr53170	transcription start site region 53170	1990 bp upstream
Tssr53171	transcription start site region 53171	1615 bp upstream
Tssr53172	transcription start site region 53172	1584 bp upstream
Tssr53173	transcription start site region 53173	1415 bp upstream
Tssr53174	transcription start site region 53174	1357 bp upstream
Tssr53175	transcription start site region 53175	405 bp upstream
Tssr53176	transcription start site region 53176	288 bp upstream
Tssr53177	transcription start site region 53177	232 bp upstream
Tssr53178	transcription start site region 53178	200 bp upstream
Tssr53179	transcription start site region 53179	166 bp upstream
Tssr53180	transcription start site region 53180	122 bp upstream