rs29568242 SNP Detail

Summary

• ID
  rs29568242
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:113173683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTT GGTAATATAA ATTTTGTTTC
  K
  TATAGTTTAG GAGACATTAA ACAAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39091770	mCV23842457	ABI	CRAMUS_MOUSE	f	SNP	G	T	T
ss145257087	ENSMUSSNP441293	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29568242					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:113173683 () rs orientation: forward

Symbol	Name	Function Class
Cdc20b	cell division cycle 20B	within coordinates
Cpgi6107	CpG island 6107	1623 bp distal
Mir449a	microRNA 449a	385 bp upstream
Mir449b	microRNA 449b	270 bp upstream
Mir449c	microRNA 449c	1058 bp downstream
Mirc34	microRNA cluster 34, including Mir449a through Mir449c	within coordinates
Rr486471	regulatory region 486471	1760 bp distal
Rr486472	regulatory region 486472	1024 bp distal
Rr486473	regulatory region 486473	1098 bp proximal
Tssr121165	transcription start site region 121165	1918 bp downstream
Tssr121166	transcription start site region 121166	461 bp upstream