rs29568276 SNP Detail

Summary

• ID
  rs29568276
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:92472186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACA TTACAGTTAT GAAGTAGCAG
  Y
  AAGATAACTT TATGGTTGGG GGTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45837561	mCV25083312	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss148831427	ENSMUSSNP3003605	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss321612244	CHEV_5_92753353	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29568276					SNP	T	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92472186 () rs orientation: forward

Symbol	Name	Function Class
Cxcl9	C-X-C motif chemokine ligand 9	Intron
Rr614603	regulatory region 614603	690 bp distal
Tssr47287	transcription start site region 47287	1336 bp downstream
Tssr47288	transcription start site region 47288	548 bp downstream
Tssr47289	transcription start site region 47289	538 bp downstream
Tssr47290	transcription start site region 47290	523 bp downstream
Tssr47291	transcription start site region 47291	481 bp downstream
Tssr47292	transcription start site region 47292	790 bp upstream
Tssr51864	transcription start site region 51864	1585 bp upstream
Tssr51865	transcription start site region 51865	1501 bp upstream
Tssr51866	transcription start site region 51866	1221 bp upstream
Tssr51867	transcription start site region 51867	619 bp upstream
Tssr51868	transcription start site region 51868	573 bp upstream
Tssr51869	transcription start site region 51869	531 bp upstream
Tssr51870	transcription start site region 51870	481 bp upstream
Tssr51871	transcription start site region 51871	446 bp upstream
Tssr51872	transcription start site region 51872	785 bp downstream