rs29568675 SNP Detail

Summary

• ID
  rs29568675
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90354552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCC CATAGGGTGT CTCCATCCCT
  R
  AACTTCACAC ACTGGGAATG CAGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45338863	mCV25136712	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss146919990	ENSMUSSNP2247069	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320390853	CHEV_2_90364365	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29568675					SNP	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90354552 () rs orientation: forward

Symbol	Name	Function Class
2310079F09Rik	RIKEN cDNA 2310079F09 gene	1780 bp upstream
Ptprj	protein tyrosine phosphatase receptor type J	Intron
Rr560519	regulatory region 560519	1306 bp distal
Tssr25101	transcription start site region 25101	1091 bp upstream
Tssr25102	transcription start site region 25102	824 bp downstream