rs29568916 SNP Detail

Summary

• ID
  rs29568916
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29779684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTCCAGCT TCCTCCTGTG
  TTTCGAGGGG AGCGCGTTAG GGTTCAGGAT TCAGGAGGAC CAGGGCAAAA TGGCGGAGGG
  GACTCGGTGG CCTGAACGGT GGGGCAAGAC CAGGCCGGCT GGCGCGGGAG GCGTCGCGTG
  TCTCCCTGAC GACGGGGCGG TGGACAGGCC TCGTGACCCA GAAGTGGGCG GAGCGTCCCC
  R
  TGTGGGGCGG GGCATCTCTG TGACGCTGGG GGCTGGGCCT AAATGGCGAA ACCCGAGAGG
  CTCCGGGGGG GGTTTGAACT GGCCAATGGG CGAGCTGCCG ACCGGTTGTC GGAAAAGGAG
  GCGGAAGCGG GGAGGAGCCG CCGCGGGAGC CGGACTGCAT CCGCCGCGGC GTCTCCATGG
  CACGACCCTG GCCTCCGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss45338965	mCV23577464	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss146397884	ENSMUSSNP3170599	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs29568916					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29779684 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11418	CpG island 11418	within coordinates
Gm75149	predicted gene, 75149	within coordinates
Odf2	outer dense fiber of sperm tails 2	within coordinates
Rr396853	regulatory region 396853	within coordinates
Rr554173	regulatory region 554173	within coordinates
Rr554174	regulatory region 554174	931 bp proximal
Rr554175	regulatory region 554175	1004 bp proximal
Tssr452	transcription start site region 452	37 bp upstream
Tssr453	transcription start site region 453	316 bp upstream
Tssr454	transcription start site region 454	333 bp upstream
Tssr455	transcription start site region 455	366 bp upstream
Tssr456	transcription start site region 456	438 bp upstream
Tssr17034	transcription start site region 17034	466 bp downstream
Tssr17035	transcription start site region 17035	429 bp downstream
Tssr17036	transcription start site region 17036	70 bp upstream
Tssr17037	transcription start site region 17037	130 bp upstream
Tssr17038	transcription start site region 17038	394 bp upstream
Tssr17039	transcription start site region 17039	424 bp upstream
Tssr17040	transcription start site region 17040	774 bp upstream
Tssr17041	transcription start site region 17041	848 bp upstream
Tssr17042	transcription start site region 17042	862 bp upstream
Tssr17043	transcription start site region 17043	883 bp upstream
Tssr17044	transcription start site region 17044	1026 bp upstream
Tssr17045	transcription start site region 17045	1189 bp upstream
Tssr23341	transcription start site region 23341	662 bp downstream