rs29569392 SNP Detail

Summary

• ID
  rs29569392
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45827660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCC GCCAGGGGAT GCGGGGAGTT
  R
  TCCGTTATCC TCAGTTCCTC AGTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45837666	mCV22817604	ABI	CRAMUS_MOUSE	f	SNP		A							G
ss51715751	NES14748555	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G	G	G	G	G		G	G	G	G		G
ss148353202	ENSMUSSNP163834	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							G
ss321527220	CHEV_5_46061557	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29569392					SNP	A	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51715751	NES14748555	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45827660 () rs orientation: forward

Symbol	Name	Function Class
1600023N17Rik	RIKEN cDNA 1600023N17 gene	610 bp upstream
Cpgi15841	CpG island 15841	within coordinates
Ncapg	non-SMC condensin I complex, subunit G	within coordinates
Rr367838	regulatory region 367838	435 bp downstream
Rr611093	regulatory region 611093	1691 bp distal
Rr611094	regulatory region 611094	1807 bp distal
Rr611095	regulatory region 611095	1402 bp distal
Rr611096	regulatory region 611096	389 bp distal
Rr611097	regulatory region 611097	627 bp distal
Tssr46141	transcription start site region 46141	417 bp downstream
Tssr46142	transcription start site region 46142	373 bp downstream
Tssr46143	transcription start site region 46143	312 bp downstream
Tssr46144	transcription start site region 46144	74 bp downstream