rs29569737 SNP Detail

Summary

• ID
  rs29569737
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:64303033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATACAGTC TGATTTTAAT
  AGTCAATCTG GAAACGGAAA GTTCAGCTTT TGTTTCCCAC AATGGGATAA TATTGTAAAC
  GACAACAGAA ACCTTACTAC ATTGTTTCAA ATCCACTAAA ATACTTTGTT TCATAGTTGA
  TAGTGAAAGT TTAAAAAATA AAAAAAAAAG ATATAGCTAT CAGGAACACT TGAATGAAGG
  K
  CTGGGCAAGA GGCCCACAGG TTAAACACTG GCCAATAATT ACTATTCAAC ACTAACCTGC
  TCAAGTGCAA GATGAATCAC CCAGAAAGCA GAACACTGAC AAGGTTTCTA AAAATTACCC
  TTGATGAAGG GTAACCTGGC AACTCCACTT GCTTCCAGCC ACAAGAGAAT GAAAAACATG
  CCAGGAATGT GGTGAGTTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39092586	mCV23508577	ABI	CRAMUS_MOUSE	f	SNP	T	G	G	G
ss149161894	ENSMUSSNP4051734	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29569737					SNP	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:64303033 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5773	CpG island 5773	1552 bp distal
Cpgi5774	CpG island 5774	981 bp distal
Gm47513	predicted gene, 47513	623 bp downstream
Gm61554	predicted gene, 61554	within coordinates
Gm61557	predicted gene, 61557	776 bp downstream
Rr273318	regulatory region 273318	within coordinates
Rr281559	regulatory region 281559	632 bp distal
Rr403821	regulatory region 403821	1582 bp downstream
Tssr120196	transcription start site region 120196	1499 bp downstream
Tssr123022	transcription start site region 123022	1942 bp upstream