rs29569832 SNP Detail

Summary

• ID
  rs29569832
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:23936629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAAGTCGAC CGAGCTGCTG ATCCGCAAGC TGCCGTTCCA
  GCGCCTGGTG CGCGAGATCG CGCAGGACTT CAAGACCGAC CTGCGCTTCC AGAGCTCGGC
  Y
  GTCATGGCTC TGCAGGAGGC GAGCGAGGCC TACCTTGTGG GTCTGTTTGA GGACACCAAC
  CTGTGCGCCA TCCACGCCAA GCGTGTCACC ATCATGCCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss39091214	mCV22702803	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29569832					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23936629 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5374	CpG island 5374	990 bp distal
Gm54518	predicted gene, 54518	1131 bp upstream
H2ac4	H2A clustered histone 4	1048 bp downstream
H3c2	H3 clustered histone 2	Coding-Synonymous
Rr403663	regulatory region 403663	1506 bp downstream
Rr403664	regulatory region 403664	260 bp downstream
Rr475938	regulatory region 475938	1510 bp distal
Rr475939	regulatory region 475939	1253 bp distal
Rr475940	regulatory region 475940	1016 bp distal
Rr475941	regulatory region 475941	369 bp distal
Rr475942	regulatory region 475942	1023 bp proximal
Tssr118860	transcription start site region 118860	1560 bp downstream
Tssr118861	transcription start site region 118861	1528 bp downstream
Tssr118862	transcription start site region 118862	1439 bp downstream
Tssr118863	transcription start site region 118863	295 bp downstream
Tssr121747	transcription start site region 121747	436 bp upstream