rs29569968 SNP Detail

Summary

• ID
  rs29569968
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:112425653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGT GTGTGTGTGT AGTCCATTGG
  Y
  TTGTAGATGG ACAGTGGGTT GATGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss45837482	mCV24791786	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss149079818	ENSMUSSNP6099052	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss321645178	CHEV_5_112706807	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs29569968					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:112425653 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16258	CpG island 16258	492 bp distal
D5Mit94	DNA segment, Chr 5, Massachusetts Institute of Technology 94	within coordinates
D5Mit94.1	DNA segment, Chr 5, Massachusetts Institute of Technology 94.1	within coordinates
Rr399260	regulatory region 399260	1211 bp downstream
Tpst2	protein-tyrosine sulfotransferase 2	within coordinates
Tssr47986	transcription start site region 47986	1094 bp downstream
Tssr47987	transcription start site region 47987	1031 bp downstream
Tssr47988	transcription start site region 47988	1017 bp downstream
Tssr47989	transcription start site region 47989	306 bp downstream
Tssr52564	transcription start site region 52564	1419 bp upstream
Tssr52565	transcription start site region 52565	1405 bp upstream