rs29569994 SNP Detail

Summary

• ID
  rs29569994
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:67598026 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTGAT CCTTACATTA ACATCCCCAT
  Y
  GGAGGGCATA ACAATGCCAT CACAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39093782	mCV23956285	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss149266896	ENSMUSSNP205536	ENSEMBL	ENSEMBL_Sanger	r	SNP	G	G		A
ss324392128	CHEV_13_67550843	CHEVERUD	SCREENING_POP	r	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29569994					SNP	C	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:67598026 () rs orientation: reverse

Symbol	Name	Function Class
Gm38307	predicted gene, 38307	1751 bp upstream
Rr388629	regulatory region 388629	467 bp upstream
Tssr120253	transcription start site region 120253	1340 bp upstream
Tssr123102	transcription start site region 123102	1684 bp downstream
Zfp874a	zinc finger protein 874a	within coordinates