rs29569996 SNP Detail

Summary

• ID
  rs29569996
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:67600191 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CAGCC TGAGTCCCTG CTTTTGCTCT
  Y
  TGTCCTCTGT GAGGAAACTT TATTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39093784	mCV23956001	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss149266940	ENSMUSSNP5889426	ENSEMBL	ENSEMBL_Sanger	r	SNP		G	G
ss324392143	CHEV_13_67553008	CHEVERUD	SCREENING_POP	r	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29569996					SNP	C	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:67600191 () rs orientation: reverse

Symbol	Name	Function Class
Gm38307	predicted gene, 38307	within coordinates
Rr388629	regulatory region 388629	within coordinates
Rr482020	regulatory region 482020	500 bp distal
Rr482021	regulatory region 482021	within coordinates
Tssr120253	transcription start site region 120253	813 bp downstream
Tssr123102	transcription start site region 123102	434 bp upstream
Zfp874a	zinc finger protein 874a	448 bp upstream