rs29570100 SNP Detail

Summary

• ID
  rs29570100
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:47260239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGACCTACTT GCGAGGCTTC CCGTCGCCGG TACGCTGCAC
  CGTGACAGGG ACCCACCACG TTAAGTGCTC ACACCACCAG CGACATAAAT AGGTTTCAAA
  Y
  CGGTGAATGT TAGACAGATT CACCCTCTTC CTTTCTCTAG CCCCCTTGGT CTCCCCTATA
  ATGCAGATAC GGTATTTGTC CAGCCACACT CTCCTGTCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39093876	mCV24531939	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss148985274	ENSMUSSNP2741200	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss324335502	CHEV_13_47202131	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29570100					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47260239 () rs orientation: forward

Symbol	Name	Function Class
1700026N04Rik	RIKEN cDNA 1700026N04 gene	within coordinates
Cpgi5551	CpG island 5551	within coordinates
Dek	DEK proto-oncogene	562 bp upstream
Rr479039	regulatory region 479039	327 bp distal
Rr479040	regulatory region 479040	within coordinates
Rr479041	regulatory region 479041	1986 bp proximal
Tssr119626	transcription start site region 119626	1171 bp downstream
Tssr119627	transcription start site region 119627	352 bp downstream
Tssr119628	transcription start site region 119628	333 bp downstream
Tssr122369	transcription start site region 122369	1386 bp upstream
Tssr122370	transcription start site region 122370	1239 bp upstream
Tssr122371	transcription start site region 122371	1141 bp upstream
Tssr122372	transcription start site region 122372	1061 bp upstream
Tssr122373	transcription start site region 122373	1016 bp upstream
Tssr122374	transcription start site region 122374	888 bp upstream
Tssr122375	transcription start site region 122375	653 bp upstream
Tssr122376	transcription start site region 122376	635 bp upstream
Tssr122377	transcription start site region 122377	592 bp upstream
Tssr122378	transcription start site region 122378	557 bp upstream
Tssr122379	transcription start site region 122379	542 bp upstream
Tssr122380	transcription start site region 122380	530 bp upstream