rs29570192 SNP Detail

Summary

• ID
  rs29570192
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:165436356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAGGGAGG CACTGGGACT
  GGGGAATGGC ATAGTCATTA AAGCACCATG CTAGCAGAAG GGCTTGAGTT CAGATCCCCA
  GTAGCTAAGT AAAATGCTAG GCGTGGCAGC AGGTGCCTAT AATGCGTCGC CTAAGAGGCA
  GAGGCAGGAG GATCCCTGGA GCAAGCTTGC TGGCCAGCCC CTCCAGCTGA ATCCTGAATC
  R
  AAAACCTCCA TCTTCAAAAA GAAACCTTGC GTTGGGGGGT GGGGGGAGAG CTATTGACAA
  AAACAGTACT GCTGACCTCT GGCCTAATAC ATACACGCTC ACCCTCACAC TCACACTTTC
  CTGTAATTGA GGTGACACCT CCACAGAGAC ATCTTCCTGG ACCGCTCTGC TGCCCGGCCA
  CCCACAAGCC CTTCTTTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45339694	mCV23022171	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	A
ss148241316	ENSMUSSNP4745575	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A
ss320608371	CHEV_2_165419936	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29570192					SNP	G	G	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165436356 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12713	CpG island 12713	168 bp proximal
Eya2	EYA transcriptional coactivator and phosphatase 2	596 bp upstream
Rr569954	regulatory region 569954	482 bp distal
Rr569955	regulatory region 569955	106 bp proximal
Rr569956	regulatory region 569956	607 bp proximal
Rr569957	regulatory region 569957	778 bp proximal
Rr569958	regulatory region 569958	955 bp proximal
Tssr21727	transcription start site region 21727	573 bp upstream
Tssr21728	transcription start site region 21728	1735 bp upstream