rs29570201 SNP Detail

Summary

• ID
  rs29570201
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156261512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACG TCCAGGATCC TGCCTCTGCC
  M
  CTTTCCAAGC TCCTTAGTGA CTTTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss45339199	mCV23687243	ABI	CRAMUS_MOUSE	f	SNP	A	C
ss148072116	ENSMUSSNP526084	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss320579283	CHEV_2_156245328	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs29570201					SNP	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156261512 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12548	CpG island 12548	763 bp proximal
Epb41l1	erythrocyte membrane protein band 4.1 like 1	1317 bp upstream
Rr47255	regulatory region 47255	1912 bp distal
Rr55936	regulatory region 55936	288 bp proximal
Tssr21155	transcription start site region 21155	884 bp downstream
Tssr21156	transcription start site region 21156	1128 bp upstream
Tssr21157	transcription start site region 21157	1245 bp upstream
Tssr21158	transcription start site region 21158	1446 bp upstream
Tssr21159	transcription start site region 21159	1460 bp upstream
Tssr21160	transcription start site region 21160	1483 bp upstream
Tssr21161	transcription start site region 21161	1491 bp upstream
Tssr21162	transcription start site region 21162	1524 bp upstream
Tssr21163	transcription start site region 21163	1537 bp upstream
Tssr21164	transcription start site region 21164	1570 bp upstream