rs29570241 SNP Detail

Summary

• ID
  rs29570241
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:36919023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCGATTG TTCAACCTGC
  TCCCTCCTTC ACTGGCGCCA CAACGAACCC AGACACTTCC AACCCTGCAG AGAGGTTTGG
  GGAGCTTTGG GCCCAGGGAG GACAGAGGGG AGAGACTCCT CCGGTCCGAA TCACCCTTCT
  CTCGCCCTCA GTGGGGTGCA GACCCCCTCA CTTGCCTACC CTAGTTTTCT CTCCAGCCCC
  R
  CAGTTGAGCT CTAGGCGCAG CCTAGAGCGC GTGAGCACAT AACCCGGCCC CCCAGCACAC
  GCACACACTC ACAAAAGCGC ACGCCCGGGA GCGCCCCCGA GCTCGCCCGC ACACTCCGCA
  CGCGAGCGCG CGTACACACC CAGGCCCCGG GGGTTCGTTC GGCTCGCATG GGGGCCCCCA
  GAAATAGACT CTGCGTGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss39094369	mCV24792175	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss148879337	ENSMUSSNP3429662	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs29570241					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:36919023 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5451	CpG island 5451	within coordinates
Cpgi5452	CpG island 5452	866 bp proximal
Gm56572	predicted gene, 56572	within coordinates
Nrn1	neuritin 1	mRNA-UTR
Rr477394	regulatory region 477394	583 bp distal
Rr477395	regulatory region 477395	151 bp distal
Rr477396	regulatory region 477396	within coordinates
Tssr119271	transcription start site region 119271	182 bp downstream
Tssr122097	transcription start site region 122097	774 bp upstream
Tssr122098	transcription start site region 122098	741 bp upstream
Tssr122099	transcription start site region 122099	664 bp upstream
Tssr122100	transcription start site region 122100	634 bp upstream
Tssr122101	transcription start site region 122101	602 bp upstream
Tssr122102	transcription start site region 122102	557 bp upstream