rs29570399 SNP Detail

Summary

• ID
  rs29570399
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30338929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTCACTTTGC TACATCCTTG GTTGCCCAAA GCCGTGTCTC CAGTGTCCAC CACACTTGAA
  TTCAAACCCA AGGCCAGCTG CTTACAATGG AGGAAATCCA TGATGGCTGA TTTTACCTCT
  CTGAGCTCCA GTTTCTTTAT CTGAAAAACG GGCATCATAA TGCACTGTGG TTTATTTAGC
  ATGGTGGATC TCAGCCTTCC AAATGCTGGA ATCCTTTCCA AGCATAAAGG ATTTTTTTGT
  TTGTTTGTTT TGTTTTTTGG GTTTTTTTGT TTGGTTTGGT TTTTGTTTTT TGGTTTTTTT
  K
  TTTGTTTGTT TGTTTGTTTG TTTTTGAGAC AGGGTTTCTC TGTATAGCCC TGGCTGTCCT
  GGAACTCACT CTGTAGACCA GGTTGGCCTC CAACTCAGAA ATCCGCCTGC CTCTGCTTCC
  CGAGTGCTAG GATTAAAGGT GTGCGTCACC ATGCCCGGCT GATAGTTATT TTTGTTGCTA
  CTTCATAACT GTGATTTTGC TGTTATGATT TGTAATATCT ATGTTTTCCT GTGGTCTTAG
  GTGACCCTGT GAAAGTGTCC TTTAGGCCCC AAAGGGTTGT GACCCCCTAG ATTGAGAATC
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45340191	mCV25441971	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29570399					SNP	G	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30338929 () rs orientation: forward

Symbol	Name	Function Class
Ptpa	protein phosphatase 2 protein activator	1110 bp downstream
Rr554328	regulatory region 554328	853 bp distal
Rr554329	regulatory region 554329	1805 bp proximal