rs29570496 SNP Detail

Summary

• ID
  rs29570496
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:103469430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAAGGAT CATGGCCAGA
  GATTTGGCCA ACCACCAGCC AAGGCTCCTT CCATCTTTGC TTGGCTAGAA CTTGCCTCTG
  CAAGATCCGG CCTCTACTTC CAGGCTAGAT GCCCAGGGGG CTAAAGCCAG GACCCCGGGC
  TCTGTTTACT TCTTCTAAGG ACAAAGGCAA TTGTTTCCTA CTGCTAATCC CAGCAGAGAC
  S
  GGGGAAATAC CAGTCTGGCA CGGCGGAATT AATTTCACAC GGAAGACTAC GCTAGGGTCA
  TGTTTTATTT ATGGTCCTGT CTGATCAAGA TGATTTCTCC CACAAGAGAT GTCCAAAGCA
  AACAATCTTA AAGACTTGGA GAATCTTCCT TTCCTGTCTT CCAAAGTAAG AGGGGAAAGG
  GGCGGAGGGG GGCGGGGGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39091897	mCV25108922	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29570496					SNP	C	C	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:103469430 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6053	CpG island 6053	366 bp proximal
Gm61190	predicted gene, 61190	1861 bp downstream
Gm61201	predicted gene, 61201	within coordinates
Mast4	microtubule associated serine/threonine kinase family member 4	within coordinates
Rr485329	regulatory region 485329	1059 bp proximal
Rr485330	regulatory region 485330	1260 bp proximal
Tssr120897	transcription start site region 120897	372 bp downstream
Tssr120898	transcription start site region 120898	333 bp downstream
Tssr120899	transcription start site region 120899	314 bp downstream
Tssr123874	transcription start site region 123874	1507 bp downstream