rs29571982 SNP Detail

Summary

• ID
  rs29571982
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121391819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AATTTGAGGC CTGCACCACA GGAATGGAAA GCCTGATGCG GTTAAAGTGG TCAAAAGGCC
  ATAGCGGATG AGGGCGTAGG TCCTGCTGAA CCTGTGTGTT GCTGGCAGAT TGTTTTCTAA
  ATATCTACGT TCATACCTTA GGTCAGTGCT CAGTCTTGGT CAGTGAAGCT GCTTTCTGCA
  AGGTCAAACC AGCTGGTGAT TCCAGCGCAG ATGGAGGAGG GGCACATGAA GATCTAACCC
  TAGCTAAGGA CCAACTGGCA ACCAATGGCT GCTGTGTGTG TGTTGGTTAG GGAGTGTGTG
  W
  GTGTGTGTGT GTGAGTGTGT GCGCGCACGC ATGTAGTCAT TTTTCTTTGA GGTATGTGTG
  GCTACCGGTC GGTTGCACAT GCAGCACTAA TCTGACTCAG GTTATATTTA AAACGGGATG
  GGTACTGCTG CTGAAAGGCT CAGTGAGAAA TGGTGAGTTC AATTCCAGGG CCCATGTGGT
  GGAAGGAGAG AACACACAGT GAAAAACTGT CCTCTGACCA TCTCGTGTGT GCTGTGGTAT
  GTGACCACTA CATACAAAAT ACATAAATAT AGTTTAAAAA TGTTCTAGCC ATGTGGTGGC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J
ss45340309	mCV23863845	ABI	CRAMUS_MOUSE	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J
rs29571982					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121391819 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frmd5	FERM domain containing 5			Intron
				Noncoding-Transcript-Variant
Rr563849	regulatory region 563849			1866 bp proximal