rs29572029 SNP Detail

Summary

• ID
  rs29572029
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12475331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAATACAA ATAAAATACA
  AGCTAGGAAA TAACACAAAA CCAAGACACA AATATCACTC AAGCAGTGCT TTGAAACCAG
  GACAATATTC ATTTAACTTT TCCTATTAGT AAAACAAGTA GGAATCACAT CATAGGATTG
  CCCTGAGGAT TGTACTAGTT TAAATAGCAG AAAACAGCTC TGTATGTGTT AGCTATTATT
  R
  CTAGAAAACA TTGCTCTTCT TCAACCAGCC AAATTAAGTA AGTTGAGGGT GGGGTGGGGG
  TGGCAGAGTT ACTCCGGGGA ATACCAAATG CAATGTTTTG CATCAGCCCG GTTTTGAAAG
  ATAAGAGCGC CCCCTCGGCA CTGCGCCCTG CCCACTGAAT CATTTACTAC CTCTAGTCCT
  GATGACTCAA ACCAGAACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39092316	mCV22708329	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss148681937	ENSMUSSNP3636176	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29572029					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12475331 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5278	CpG island 5278	509 bp proximal
Lgals8	lectin, galactose binding, soluble 8	within coordinates
Rr281011	regulatory region 281011	within coordinates
Rr369646	regulatory region 369646	133 bp upstream
Rr369647	regulatory region 369647	699 bp upstream
Tssr118345	transcription start site region 118345	220 bp upstream
Tssr121451	transcription start site region 121451	1324 bp upstream
Tssr121452	transcription start site region 121452	1168 bp upstream
Tssr121453	transcription start site region 121453	649 bp downstream
Tssr121454	transcription start site region 121454	960 bp downstream
Tssr121455	transcription start site region 121455	982 bp downstream
Tssr121456	transcription start site region 121456	1088 bp downstream
Tssr121457	transcription start site region 121457	1112 bp downstream