rs29572438 SNP Detail

Summary

• ID
  rs29572438
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:125574704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCAAAGCC GCAATTTTAG
  GCTGACCTAA TGGCTGCACC CCTTTGGCCA GTAGGGAGAG GCCAATGGGA CAAAGGTAAA
  GGCACCATCC TTACATTTGG TCTTTGCATA GTCTCCTGGA CTAGGGCAAA CACTTCTGCC
  TGAATGCACC AAGTCACCCC AGTAGCTTGC AGCAGAATGA GAAGTTGGGA TAAGTAATAT
  R
  AACCCCTCCT CCCCCCAACA CACACCCACA CACTAAAATG CACATCCATT TTCTAACCCT
  ACGATGGGGC ATCTCCACAT CCACTCATTC ATCAACAGCC AACAATGACT GCCCGACTTG
  AAGGAGCCTA TCCTAGCATA ACTGTCTCTC TCCTGAGAGA GGTGTCATCC AGCTGCGGAT
  TGAGACAGAG ACCCACAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45339047	mCV22614068	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	G
ss147486254	ENSMUSSNP1527663	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		G
ss320497856	CHEV_2_125558520	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29572438					SNP	G	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125574704 () rs orientation: forward

Symbol	Name	Function Class
BC026863	cDNA sequence BC026863	within coordinates
Cpgi12201	CpG island 12201	650 bp distal
Rr397270	regulatory region 397270	737 bp downstream
Rr564273	regulatory region 564273	within coordinates