rs29572535 SNP Detail

Summary

• ID
  rs29572535
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:60178821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACTCGGG AGGCAGAGGC
  AGGAGGATTT CTGAGTTTCG AGGCCAGCCT GGTCTACAAA GTGAGTTCCA GGACAGCCAG
  GGCTATACAG AGAAACCCTG TCTCGAGAAA CAAACAAACA AACAAAACCA AAAAACAAAC
  CCAAACTAAC AAACAAAAAA GAATGATTGC TGCCACGGGT AACATCTGAG GAAGCCATCA
  R
  GAAGGATTCA GATAATTATC TGCTTTAAAA AGGAATCTAA ACACAAACAA ATAACGCACA
  CAGAACACAG ACCTTCCCAG GCTTCTCAGC CCAGAGTTCT GTGTTTGCTT TGGTACCCAG
  CACAGCCAGC ATAGCTTCAT AAGGGCGCTC GTGAAGAAGA TCTAGTTCTG TTGGAGGCTC
  AGTTACAAAG GCGAATGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss39093012	mCV22916469	ABI	CRAMUS_MOUSE	f	SNP		G	A				G		G
ss49114633	NES12407659	PERLEGEN	MM_PANEL2	f	SNP	G			G	G	G		A	G	G		A	G		G
ss149083720	ENSMUSSNP4302035	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						G
ss324360227	CHEV_13_60132368	CHEVERUD	SCREENING_POP	f	SNP											A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs29572535					SNP	G	G	A	G	G	G	G	A	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49114633	NES12407659	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:60178821 () rs orientation: forward

Symbol	Name	Function Class
A530065N20Rik	RIKEN cDNA A530046M15 gene	within coordinates
Rr284562	regulatory region 284562	622 bp distal
Tssr120109	transcription start site region 120109	1378 bp downstream
Tssr120110	transcription start site region 120110	1314 bp downstream
Tssr120111	transcription start site region 120111	1298 bp downstream