rs29573216 SNP Detail

Summary

• ID
  rs29573216
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:38303856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAG GAGAGAGAGG CAGGAAGGAA
  R
  GTGACAGAGG ACATGGCTAT GTGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39094116	mCV23687353	ABI	CRAMUS_MOUSE	f	SNP	G	G						A		A
ss51097463	NES14354917	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	A	G	A	G	A	A	G	A
ss148895291	ENSMUSSNP6397726	ENSEMBL	ENSEMBL_Sanger	f	SNP		G								A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29573216					SNP	G	G	G	G	G	G	G	A	G	A	G	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51097463	NES14354917	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:38303856 () rs orientation: forward

Symbol	Name	Function Class
Rr275879	regulatory region 275879	within coordinates
Rr279089	regulatory region 279089	1458 bp proximal
Rr279090	regulatory region 279090	1848 bp proximal