rs29573945 SNP Detail

Summary

• ID
  rs29573945
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:43859561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGC AGCAACTGGA CTCAGTGAGC
  R
  GTTAAAAGAA TACATTAAGT GAGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss39594021	mCV24147673	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss147020854	ENSMUSSNP3994438	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss325601063	CHEV_18_43886150	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29573945					SNP	A	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:43859561 () rs orientation: forward

Symbol	Name	Function Class
Rr393629	regulatory region 393629	602 bp downstream
Rr537115	regulatory region 537115	866 bp distal
Rr537116	regulatory region 537116	279 bp proximal
Rr537117	regulatory region 537117	724 bp proximal
Spink1	serine peptidase inhibitor, Kazal type 1	1573 bp downstream