rs29574239 SNP Detail

Summary

• ID
  rs29574239
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60657914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAACAAAA ACAACAACAA
  AAACCCAAGT GATTATCAAA ACCCAGGTCT TGTAATAGGT GTAGGATTCA CAAGGGAACC
  TGCTGTAAAG TTACATTCCT GCCTAGAAAT TTATATCGAT TCTGCCGTCA GAATCTATAT
  AAGTAAACCT AGATTTTCCG TTTTAAATCC CTAAGGCAAT TCCTCTGGTG ATGCAAAACC
  R
  CACTTAAAAA ACACTGGCTG GCTCTGGTCC TAGACCCTGA CCCCTGAGAA GGGAGAATGT
  GTCTCTATCC AGGAAAGGAG ATTTAAACTC ACAAAAACAA AATAAAAGAT GATAAGCCAT
  GATAATCCAT GAGGCCAACG AATTCACTAA CATGTAAAAA AAAAAAAAAC AACTGCAAAT
  TATCTGGATA ATAATATACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39592556	mCV24047065	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					G		G
ss50418832	NES13463080	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	G	G		A	G	G	A		A	A	G	A		G
ss147246148	ENSMUSSNP4411852	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss325639817	CHEV_18_60684496	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29574239					SNP	A	A	G	G	A	G	G	G	A	G	G	A	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50418832	NES13463080	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60657914 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10090	CpG island 10090	1061 bp proximal
Dctn4	dynactin 4	1343 bp upstream
Gm58902	predicted gene, 58902	within coordinates
Rr346411	regulatory region 346411	1314 bp distal
Rr352957	regulatory region 352957	486 bp proximal
Tssr151313	transcription start site region 151313	1352 bp upstream
Tssr153448	transcription start site region 153448	1134 bp downstream
Tssr153449	transcription start site region 153449	1201 bp downstream
Tssr153450	transcription start site region 153450	1244 bp downstream