rs29574339 SNP Detail

Summary

• ID
  rs29574339
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:55116864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATTA TCTTTTTTTA GCTCGATCTG
  R
  AGCAATTGTG TATACTTTCA CAGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39593135	mCV25094957	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss147146737	ENSMUSSNP2953946	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss325626851	CHEV_18_55143446	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29574339					SNP	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:55116864 () rs orientation: forward

Symbol	Name	Function Class
Rr538024	regulatory region 538024	within coordinates
Rr538025	regulatory region 538025	868 bp proximal
Tssr153351	transcription start site region 153351	1422 bp downstream
Zfp608	zinc finger protein 608	within coordinates