rs29575009 SNP Detail

Summary

• ID
  rs29575009
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:82603275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCATCTGG AAGTGGGACT
  GCAGGAGTTC TCTGGTGGCC TCGTGCTGTC CCTCTGGCCA CTTCTCATGG TGGGGTGGTC
  AGCGGCAGCT CGCCATGGCA GTGCCCATTG GTACACACTA ACCTCGGTGG AAAAATAACC
  ATTCCCTGCC TCCTAGAAAG GACTCATTCT TAGCTTTAGG GGGGTTCCTG TCACTGAATC
  R
  AGTCGCTGCC CTGGATGCAG GGCTGGCCTG GGCGACGCTC CAGGGATGAG GAGCTGAGAA
  CCCCAGTCTA ATAATGTCCA TCGACACCTC CTTATCCCTC TAACGTACTA TGTCTTTTGA
  TTTAGCATGC CTTCTGTAGA CCTTCCAAAG AGCCCCACAC TGGCACCGTC ACCCCTAGGA
  AGGCAGGTGA TGGTTGATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J
ss39592567	mCV23909301	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss147616977	ENSMUSSNP7032799	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J
rs29575009					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82603275 () rs orientation: forward

Symbol	Name	Function Class
D18Nds1	DNA segment, Chr 18, Nuffield Department of Surgery 1	1310 bp proximal
Gm58829	predicted gene, 58829	within coordinates
Mbp	myelin basic protein	within coordinates
Rr541827	regulatory region 541827	1015 bp distal
Tssr152152	transcription start site region 152152	1025 bp downstream
Tssr152153	transcription start site region 152153	901 bp downstream
Tssr152154	transcription start site region 152154	878 bp downstream
Tssr152155	transcription start site region 152155	842 bp downstream
Tssr152156	transcription start site region 152156	773 bp downstream
Tssr152157	transcription start site region 152157	695 bp downstream
Tssr152158	transcription start site region 152158	658 bp downstream
Tssr152159	transcription start site region 152159	634 bp downstream
Tssr152160	transcription start site region 152160	588 bp downstream
Tssr152161	transcription start site region 152161	572 bp downstream
Tssr152162	transcription start site region 152162	551 bp downstream
Tssr152163	transcription start site region 152163	534 bp downstream
Tssr152164	transcription start site region 152164	489 bp downstream
Tssr152165	transcription start site region 152165	416 bp downstream
Tssr152166	transcription start site region 152166	380 bp downstream
Tssr152167	transcription start site region 152167	348 bp downstream
Tssr152168	transcription start site region 152168	319 bp downstream
Tssr152169	transcription start site region 152169	266 bp downstream
Tssr152170	transcription start site region 152170	158 bp downstream
Tssr152171	transcription start site region 152171	114 bp downstream
Tssr152172	transcription start site region 152172	11 bp downstream
Tssr152173	transcription start site region 152173	within coordinates
Tssr152174	transcription start site region 152174	16 bp upstream
Tssr152175	transcription start site region 152175	39 bp upstream
Tssr152176	transcription start site region 152176	248 bp upstream
Tssr152177	transcription start site region 152177	416 bp upstream
Tssr154083	transcription start site region 154083	920 bp upstream
Tssr154084	transcription start site region 154084	866 bp upstream
Tssr154085	transcription start site region 154085	609 bp upstream
Tssr154086	transcription start site region 154086	63 bp upstream
Tssr154087	transcription start site region 154087	133 bp downstream
Tssr154088	transcription start site region 154088	173 bp downstream
Tssr154089	transcription start site region 154089	284 bp downstream
Tssr154090	transcription start site region 154090	356 bp downstream