rs29575358 SNP Detail

Summary

• ID
  rs29575358
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118733840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCACA TTTCTTGGGG ACACCACTGT
  Y
  CTAGGACACT TTGGGATCTC TGGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45339182	mCV22544951	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss147316866	ENSMUSSNP1259147	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320472571	CHEV_2_118729095	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29575358					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118733840 () rs orientation: forward

Symbol	Name	Function Class
Bahd1	bromo adjacent homology domain containing 1	Intron
Cpgi12098	CpG island 12098	216 bp distal
Rr397220	regulatory region 397220	1855 bp downstream
Rr563367	regulatory region 563367	1896 bp distal
Rr563370	regulatory region 563370	within coordinates
Rr563371	regulatory region 563371	1716 bp distal
Rr563372	regulatory region 563372	1258 bp distal
Rr563373	regulatory region 563373	806 bp distal
Rr563374	regulatory region 563374	313 bp distal
Tssr19588	transcription start site region 19588	1956 bp downstream
Tssr19589	transcription start site region 19589	1871 bp downstream
Tssr19590	transcription start site region 19590	1742 bp downstream
Tssr19591	transcription start site region 19591	1696 bp downstream