rs29575581 SNP Detail

Summary

• ID
  rs29575581
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:144557552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAGGGCTTG GGGAGTTGCC CTTATGTGAC TGATAGCCAC
  AAGTCTATGG GGGCAGGGCT GGTGCCAGGA GTAGCAAAAT TCCTATAGTC CCTTCAGGGT
  Y
  TCAGGGCTTC TAGCTTGACC TTACCAGGCT TCCTCTCACA GTCCACTCCC CCACGTGTTT
  TAGTTTGAGA TGTATTAAGA ATGTTGAGAT ACTCACTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J
ss45341133	mCV25227941	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss147805192	ENSMUSSNP2416301	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J
rs29575581					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144557552 () rs orientation: forward

Symbol	Name	Function Class
Dtd1	D-tyrosyl-tRNA deacylase 1	within coordinates
Rr46878	regulatory region 46878	249 bp proximal
Rr374001	regulatory region 374001	within coordinates
Tssr20549	transcription start site region 20549	838 bp downstream
Tssr20550	transcription start site region 20550	773 bp downstream
Tssr26613	transcription start site region 26613	1070 bp upstream