rs29575587 SNP Detail

Summary

• ID
  rs29575587
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:145743140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTG TGAGATGCAG AAAATGGATA
  Y
  TGATGAAAGA TTCTTGACCC ATAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45339656	mCV23170949	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	T
ss320538603	CHEV_2_145726956	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29575587					SNP	T	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145743140 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12364	CpG island 12364	1810 bp proximal
Gm74898	predicted gene, 74898	within coordinates
Gm74902	predicted gene, 74902	785 bp upstream
Naa20	N(alpha)-acetyltransferase 20, NatB catalytic subunit	879 bp upstream
Rr39035	regulatory region 39035	1940 bp distal
Rr55740	regulatory region 55740	1660 bp proximal
Rr63594	regulatory region 63594	358 bp distal
Rr374012	regulatory region 374012	within coordinates
Rr397366	regulatory region 397366	1812 bp upstream