rs29575652 SNP Detail

Summary

• ID
  rs29575652
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:52316409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATTT TCCAAGTGTC CCTCACAGAA
  R
  GGGGGATGGA GTTGACTAGT AGAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45340652	mCV24651209	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29575652					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:52316409 () rs orientation: forward

Symbol	Name	Function Class
A430018G15Rik	RIKEN cDNA A430018G15 gene	within coordinates
Arl5a	ADP-ribosylation factor-like 5A	1523 bp upstream
Cacnb4	calcium channel, voltage-dependent, beta 4 subunit	1923 bp downstream
Cpgi11647	CpG island 11647	1239 bp distal
Rr556939	regulatory region 556939	1507 bp distal
Rr556940	regulatory region 556940	1442 bp distal
Rr556941	regulatory region 556941	725 bp distal
Tssr494	transcription start site region 494	1454 bp upstream
Tssr17726	transcription start site region 17726	1376 bp downstream
Tssr17727	transcription start site region 17727	1151 bp downstream
Tssr24072	transcription start site region 24072	1591 bp upstream
Tssr24073	transcription start site region 24073	1575 bp upstream
Tssr24074	transcription start site region 24074	1481 bp upstream