rs29576236 SNP Detail

Summary

• ID
  rs29576236
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121618146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAAAGGAAA TCCCCCGTGC TGCTGACTGG CTTAGTACTT
  CAGCCACGCC CGTTAAACTA AACATCTATG CAATTACACT AAACCAATTT ATCTTTTCCG
  W
  AGGAGAAATC TCAAATACTG CTATCATTTT TTGGTTTGGA CAAAAATAAC AGAAGGGTCA
  GTTATCTGAA GAAGAGGAAG AAAACCTGGG TCAGAGTAG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45339861	mCV23337370	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss147399693	ENSMUSSNP5127351	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss320485400	CHEV_2_121613401	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29576236					SNP	A	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121618146 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frmd5	FERM domain containing 5			Intron
				Noncoding-Transcript-Variant
Rr563873	regulatory region 563873			11 bp distal
Rr563874	regulatory region 563874			161 bp proximal