rs29576744 SNP Detail

Summary

• ID
  rs29576744
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:165436393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAGCACC ATGCTAGCAG
  AAGGGCTTGA GTTCAGATCC CCAGTAGCTA AGTAAAATGC TAGGCGTGGC AGCAGGTGCC
  TATAATGCGT CGCCTAAGAG GCAGAGGCAG GAGGATCCCT GGAGCAAGCT TGCTGGCCAG
  CCCCTCCAGC TGAATCCTGA ATCAAAAACC TCCATCTTCA AAAAGAAACC TTGCGTTGGG
  R
  GGTGGGGGGA GAGCTATTGA CAAAAACAGT ACTGCTGACC TCTGGCCTAA TACATACACG
  CTCACCCTCA CACTCACACT TTCCTGTAAT TGAGGTGACA CCTCCACAGA GACATCTTCC
  TGGACCGCTC TGCTGCCCGG CCACCCACAA GCCCTTCTTT CCCTCTCCTT GGTATTTACA
  ACTTTCTTCA GCTGCCTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45341036	mCV23022160	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	G
ss148241322	ENSMUSSNP5727803	ENSEMBL	ENSEMBL_Sanger	f	SNP			G		G
ss320608372	CHEV_2_165419973	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29576744					SNP	A	A	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165436393 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12713	CpG island 12713	131 bp proximal
Eya2	EYA transcriptional coactivator and phosphatase 2	559 bp upstream
Rr569954	regulatory region 569954	519 bp distal
Rr569955	regulatory region 569955	69 bp proximal
Rr569956	regulatory region 569956	570 bp proximal
Rr569957	regulatory region 569957	741 bp proximal
Rr569958	regulatory region 569958	918 bp proximal
Tssr21727	transcription start site region 21727	536 bp upstream
Tssr21728	transcription start site region 21728	1698 bp upstream