rs29577078 SNP Detail

Summary

• ID
  rs29577078
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:58969498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCCA CGCTCCGCGC GGGTGCGGGC
  R
  GCGAATCTGG GCTGGGACCG TACTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39595245	mCV24038465	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss147203011	ENSMUSSNP1099971	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		G
ss325637465	CHEV_18_58996080	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29577078					SNP	A	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:58969498 () rs orientation: forward

Symbol	Name	Function Class
Adamts19	ADAM metallopeptidase with thrombospondin type 1 motif 19	241 bp upstream
Cpgi10085	CpG island 10085	within coordinates
Rr538499	regulatory region 538499	within coordinates
Tssr151225	transcription start site region 151225	244 bp downstream
Tssr151226	transcription start site region 151226	217 bp downstream
Tssr151227	transcription start site region 151227	87 bp downstream
Tssr151228	transcription start site region 151228	52 bp downstream
Tssr151229	transcription start site region 151229	30 bp downstream
Tssr151230	transcription start site region 151230	295 bp upstream